simplify sbib, sdoi

spubmed.sh

@@ -18,20 +18,16 @@ if [ "$1" == "-h" ] ; then
     exit 0
 fi
 
-#Setup defaults
-styleSheet=${pubmedStyleSheet:-$HOME/bin/pubmed2bibtex.xsl}
-bibdFileOut=${bibdFileOut:-$HOME/projects/bibd/OMEGA.bib}
-pdfPathOut=${pdfPathOut:-$HOME/projects/bibd/papers}
-relPath=$(basename $pdfPathOut)
+set -e #exit if an error
+# set -v -x -e #debugging
 
+#Setup defaults
 author=$1
 journal=$2
 year=$3
 
-set -e #exit if an error
-
 #curl's option globoff needed for using brackets in a uri
-uid=$(curl -s --globoff "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pubmed&term=$author[au]+AND+$journal[ta]+AND+$year[dp]&retmode=xml" | grep -E "<Id>[0-9]+</Id>" | sed -E "s#<Id>([0-9]+)</Id>#\1#")
+uid=$(curl -s --globoff "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pubmed&term=$author[au]+AND+$journal[ta]+AND+$year[dp]&retmode=xml" | grep -E "<Id>[0-9]+</Id>" | sed -E "s|<Id>([0-9]+)</Id>|\1|")
 
 if [ -z "$uid" ]; then
   echo "pubmed id not found"
@@ -45,16 +41,7 @@ if [[ $(echo $uid | wc -w) -gt 1 ]]; then
   exit 1
 fi
 
-echo $uid | xclip -selection clipboard
 echo $uid
+# echo $uid | xclip -selection clipboard
+echo $uid | wl-copy
 
-# #request pubmed xml and transform into bibtex
-# curl -s "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=pubmed&id=$uid&retmode=xml" > $uid.xml
-# xsltproc --novalid $styleSheet $uid.xml > $uid.bib
-# 
-# #import bibtex
-# echo "importing $uid.bib"
-# cat $uid.bib >> $bibdFileOut
-# 
-# #clean up
-# rm $uid.xml $uid.bib