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Drafted fig 3 with #results snapshots

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ackman678
2013-09-06 11:31:47 -04:00
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wholeBrain_main.md
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@@ -50,19 +50,6 @@ The cerebral cortex exhibits spontaneous and sensory evoked patterns of activity
![**Figure 1.** Calcium domains throughout neonatal mouse isocortex](figure1.png)
<!---Figure 1 metadata
* neonate_ms_fig.png
* binary masks: Screen_Shot_2013-03-29_at_12.06.25_PM_crop.png, ..._crop1.png, ..._crop2.png
* domain map: Screen_Shot_2013-05-14_at_4.11.51_PM_crop.png
* hists: 120518_07_connComponents_BkgndSubtr60px-20130327-163111domains20130402-151440-crop.png
--->
<!--- TODO: add a domain centroid size/duration map similar to: ![](../figures/Screen_Shot_2013-04-03_at_8.42.49_AM.png)
![](../figures/Screen_Shot_2013-04-03_at_10.04.36_AM.png)
--->
metric | mean | min | max | unit
------------- | ----- | ---- | ------ | --------------------
diameter | 396.0 | 22.7 | 2383.5 | µm
@@ -87,7 +74,7 @@ frequency | 2.9 | | | domains/sec/hemisphere
![**Figure 2.** Cortical domains are state dependent](figure2.png)
<!---
<!---Figure 2 metadata
Temporal correlation of activity between the hemispheres and preceding motor activation:
@@ -148,23 +135,17 @@ xcorr during motor period.
* Regional effects, more corr anticorr in certain regions?
* State dependent corr?
<!--
* sensory input required or stimulation experiments?
* Each hemisphere 'training' the other one in preparation for behaviorally relevant sensory-motor imitations '[[mirror_neurons]]' hypothesis? -->
<!--- * Each hemisphere 'training' the other one in preparation for behaviorally relevant sensory-motor imitations '[[mirror_neurons]]' hypothesis? --->
![**Figure 3.** Cortical domain activity exhibits bilateral symmetry](figure3.png)
![](../figures/Screen_Shot_2013-04-23_at_8.45.18_AM.png)
![](../figures/Screen_Shot_2013-04-23_at_8.46.27_AM.png)
![](../figures/Screen_Shot_2013-04-23_at_8.51.55_AM.png)
xy pearson corr coef ML | xy pearson corr coef AP
--- | ---
p = 1.1591e-28 | p = 7.0982e-07
![](../figures/Screen_Shot_2013-04-22_at_4.29.28_PM.png) | ![](../figures/Screen_Shot_2013-04-22_at_4.29.24_PM.png)
*scatterplots in figure 3* ||
@@ -174,5 +155,35 @@ p = 1.1591e-28 | p = 7.0982e-07
<!--- # References --->
<!---Figure 1 metadata
* neonate_ms_fig.png
* binary masks: Screen_Shot_2013-03-29_at_12.06.25_PM_crop.png, ..._crop1.png, ..._crop2.png
* domain map: Screen_Shot_2013-05-14_at_4.11.51_PM_crop.png
* hists: 120518_07_connComponents_BkgndSubtr60px-20130327-163111domains20130402-151440-crop.png
--->
<!--- TODO: add a domain centroid size/duration map similar to: ![](../figures/Screen_Shot_2013-04-03_at_8.42.49_AM.png)
![](../figures/Screen_Shot_2013-04-03_at_10.04.36_AM.png)
--->
<!---Figure 3 metadata
binary mask snapshots, cropped from screen shots in [[2013-04-19_analysis]]
Screen_Shot_2013-04-19_at_8.26.00_AM_fr1786.png
Screen_Shot_2013-04-19_at_8.27.49_AM_fr2134.png
Screen_Shot_2013-04-19_at_8.30.27_AM_fr759.png
Screen_Shot_2013-04-19_at_8.30.51_AM_fr373.png
Screen_Shot_2013-04-19_at_8.38.54_AM_fr177.png
activefraction hemis AP & ML all: ![](../figures/Screen_Shot_2013-04-23_at_8.45.18_AM.png)
activefraction hemis AP & ML segment: ![](../figures/Screen_Shot_2013-04-23_at_8.46.27_AM.png)
activefraction hemis AP & ML segment: ![](../figures/Screen_Shot_2013-04-23_at_8.51.55_AM.png)
scatterplot ML Screen_Shot_2013-04-22_at_4.29.28_PM.png
scatterplot AP
--->
<<[references.txt]