date, tags, author

date	tags	author
2016-06-20 16:22:23	analysis, python, wholeBrain, data visualization	James B. Ackman

python opencv testing

This is a python/opencv analysis repo to test:

• read capability of hdf5 matlab d2r.mat files with h5py and hemispheric symmetry calculations using numpy/opencv
• read capability of tiff movies and make dF/F (F-F0/F0) normalization and display using numpy/opencv

The python notebooks have contain some subfunctions and routines that are potentially instructive. The images saved in assets are a number of snapshot frame of bi-hemispheric activity patterns that were saved by pressing s while playing movies in 2016-06-15-opencv-RGBmasks-xcorr.ipynb

See also anaconda python installation and opencv setup instructions

For companion functions based on some of the scripts implemented in these notebooks see hemisphereXcorr.py and playtiffmovie.py at pyWholeBrain.